STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY17409.1Phenylacetic acid degradation operon negative regulatory protein paaX. (244 aa)    
Predicted Functional Partners:
AIY17408.1
Putative membrane transport protein.
       0.773
AIY17411.1
Phenylacetic acid degradation protein PaaD, thioesterase.
     
 0.580
AIY16268.2
Transcriptional regulator, TetR family.
  
    0.571
AIY17410.1
Short-chain dehydrogenase/reductase SDR.
       0.544
AIY17407.1
Putative transmembrane protein.
 
  
 0.530
AIY19153.2
Putative transmembrane protein.
 
  
 0.525
AIY18530.1
D-aminoacylase.
  
     0.511
AIY19316.1
Transcriptional regulator.
   
    0.485
AIY16777.1
Beta-carotene ketolase.
  
     0.449
AIY15785.1
Hypothetical protein.
   
    0.442
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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