STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18397.1Putative stomatin/prohibitin-family membrane protease subunit YbbK. (381 aa)    
Predicted Functional Partners:
AIY17438.1
Putative activity regulator of membrane protease YbbK.
 
 
 0.971
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.897
AIY17439.1
Membrane protein, putative.
       0.790
AIY17117.1
Peptidase, M16 family; Belongs to the peptidase M16 family.
  
 0.786
AIY17440.1
Hypothetical protein.
  
  
 0.735
AIY17136.1
Cytochrome c oxidase polypeptide II.
   
 
 0.660
AIY17437.1
ABC transporter, ATP-binding protein.
       0.656
AIY16733.1
UPF0301 protein YqgE; Belongs to the UPF0301 (AlgH) family.
  
    0.634
AIY17436.1
Hypothetical protein.
       0.615
AIY15648.1
Inner membrane protein YqiK.
  
 0.605
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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