STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18438.1Aliphatic amidase amiE. (382 aa)    
Predicted Functional Partners:
AIY17589.1
Acetylornithine deacetylase.
     
 0.752
AIY17588.1
Exoenzymes regulatory protein AepA precursor.
       0.745
AIY17590.1
Transketolase; Belongs to the transketolase family.
  
  
 0.594
AIY19935.2
5-aminopentanamidase.
  
     0.563
AIY18963.1
Putative hydrolase.
  
     0.514
AJR18437.1
Transcriptional regulator, TetR family.
       0.507
talA
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
     
 0.491
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
    0.491
speB_1
Agmatinase; Belongs to the arginase family.
  
 0.459
speB_2
Agmatinase; Belongs to the arginase family.
  
 0.459
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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