STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY17817.1Transcriptional regulator, IclR family. (253 aa)    
Predicted Functional Partners:
AIY15707.1
Transcriptional regulator, IclR family.
  
     0.771
AIY19246.1
Transcriptional regulator, IclR family.
  
     0.770
AIY19208.1
Transcriptional regulator, IclR family.
  
     0.765
AJR18785.1
Transcriptional regulator, IclR family.
  
     0.762
hutI
Imidazolonepropionase.
 
   
 0.627
AIY18261.1
Transcriptional regulator, IclR family.
  
     0.621
AIY17814.1
Formiminoglutamic iminohydrolase.
 
     0.608
AIY17816.2
Histidine ammonia-lyase.
 
   
 0.603
AIY19962.2
N-formylglutamate deformylase [alternative form].
 
     0.581
hutU_1
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
     
 0.550
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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