STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18497.1Transcriptional regulator, TetR family. (211 aa)    
Predicted Functional Partners:
AIY18273.1
Cytosine/purine/uracil/thiamine/allantoin permease family protein; Belongs to the purine-cytosine permease (2.A.39) family.
 
     0.673
AIY15931.1
Hypothetical protein.
  
     0.663
AIY19975.2
Cytosine/purine/uracil/thiamine/allantoin permease family protein; Belongs to the purine-cytosine permease (2.A.39) family.
 
     0.611
AIY18880.1
Amino acid permease family protein.
 
     0.554
AIY19472.2
Transcriptional regulator, TetR family.
  
     0.524
AIY17890.1
Cytosine/purine/uracil/thiamine/allantoin permease family protein; Belongs to the purine-cytosine permease (2.A.39) family.
 
     0.523
AIY17898.1
Agmatine/putrescine antiporter, associated with agmatine catabolism.
 
     0.487
AJR18006.1
Hypothetical protein.
  
     0.475
AIY19979.2
Transcriptional regulator, AsnC family.
  
    0.446
AIY19302.1
Transcriptional regulator.
  
    0.446
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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