STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18579.1Fibronectin type III domain protein. (1013 aa)    
Predicted Functional Partners:
AJR18482.1
Putative phosphoglycerate mutase.
  
  
  0.723
AJR18821.1
Hypothetical protein.
  
     0.627
AIY15678.2
Serine protease, subtilase family.
 
 
 0.572
AJR18580.1
Hypothetical protein.
       0.562
AIY16718.1
Peptidase S1 and S6, chymotrypsin/Hap.
  
 
 0.532
AIY18264.1
Signal peptidase I; Belongs to the peptidase S26 family.
       0.528
AIY20027.2
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.528
AIY18893.1
Hypothetical protein.
  
     0.520
AIY19301.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA.
 
     0.520
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
 
 0.476
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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