Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIY18434.1Hypothetical protein. (477 aa)    
Predicted Functional Partners:
AJR18857.1
Putative HNH endonuclease domain protein.
  
     0.734
AJR18451.1
Putative HNH endonuclease domain protein.
  
     0.730
AJR18302.1
Putative HNH endonuclease domain protein.
  
     0.716
AIY17643.1
Hypothetical protein.
 
     0.559
AIY18433.2
Signal peptidase I.
       0.511
AIY17171.1
Hypothetical protein.
  
    0.460
AIY18837.1
Hypothetical protein.
 
     0.455
AIY16261.1
Hypothetical protein.
  
     0.426
AIY17823.1
Hypothetical protein.
  
   
 0.426
AIY18435.2
Hypothetical protein.
       0.423
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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