STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY18438.1Transcriptional regulators. (341 aa)    
Predicted Functional Partners:
manB
Phosphomannomutase.
  
  
 0.899
AJR18626.1
Protein YcaR in KDO2-Lipid A biosynthesis cluster; Belongs to the UPF0434 family.
 
     0.861
AIY15981.2
Hypothetical protein.
  
   
 0.771
AIY19181.1
Hypothetical protein.
  
     0.767
AIY20060.2
Hypothetical protein.
       0.766
AIY19377.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase.
  
     0.756
AIY19701.2
ErfK/YbiS/YcfS/YnhG family protein.
  
     0.740
AIY15788.2
Integral membrane protein.
  
   
 0.739
AIY19595.1
Putative membrane protein.
  
   
 0.711
AIY20061.2
Hypothetical protein.
 
     0.675
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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