STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY20061.2Hypothetical protein. (155 aa)    
Predicted Functional Partners:
AIY20060.2
Hypothetical protein.
 
     0.790
AIY18078.1
Hypothetical protein.
  
     0.740
AIY18388.1
Methionine synthase, vitamin-B12 independent, putative.
  
     0.701
AJR18172.1
Hypothetical protein.
  
     0.682
AIY18438.1
Transcriptional regulators.
 
     0.681
AJR18626.1
Protein YcaR in KDO2-Lipid A biosynthesis cluster; Belongs to the UPF0434 family.
       0.615
manB
Phosphomannomutase.
       0.615
AIY17095.2
GCN5-related N-acetyltransferase.
  
     0.592
AIY18226.1
Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII.
  
     0.529
AJR17958.1
Hypothetical protein.
  
     0.504
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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