STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY18708.1Iron-chelator utilization protein. (274 aa)    
Predicted Functional Partners:
AIY20096.2
ABC Fe(3+) transporter, substrate binding component.
 
  
 0.929
fepD_1
ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.801
AIY20097.2
Transcriptional regulator, AraC family.
 
  
 0.792
fepC_1
ABC-type Fe3+-siderophore transport system, ATPase component.
 
  
 0.746
AIY18706.2
ABC-type Fe3+-siderophore transport system, permease 2 component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.711
AJR18236.1
Transcriptional regulator, AraC family.
  
  
 0.597
AIY20195.2
Transcriptional regulator, AraC family.
  
  
 0.556
AIY15646.2
Transcriptional regulator, TetR family.
  
     0.442
AIY15645.1
Hypothetical protein.
 
     0.419
AIY15752.1
2-Amino-2-deoxy-isochorismate synthase.
  
  
 0.414
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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