STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citE_1Hydroxymethylglutaryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (297 aa)    
Predicted Functional Partners:
citE_3
L-malyl-CoA/beta-methylmalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.926
AIY18817.1
Putative transcriptional regulator.
 
  
 0.893
AIY18820.1
Long-chain-fatty-acid--CoA ligase.
   
 0.890
AJR18692.1
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.822
AJR18691.1
Alcohol dehydrogenase.
       0.779
AIY18818.1
Butyryl-CoA dehydrogenase.
 
  
 0.768
AIY20113.2
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.720
AIY15740.1
Ribulose-5-phosphate 4-epimerase-related epimerase and aldolase.
   
    0.670
AIY18816.1
2,4-dienoyl-CoA reductase [NADPH].
       0.597
AIY20114.2
Alcohol dehydrogenase.
     
 0.562
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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