STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaDPoly(3-hydroxyalkanoate) depolymerase. (267 aa)    
Predicted Functional Partners:
phbC
Polyhydroxyalkanoic acid synthase.
 
   
 0.940
AIY19062.1
Hypothetical protein.
       0.773
AIY20154.2
Regulatory protein.
 
    0.765
AIY19532.1
Beta-ketoadipate enol-lactone hydrolase.
  
     0.671
AIY16493.1
Beta-ketoadipate enol-lactone hydrolase.
  
     0.669
AIY15629.1
acyl-CoA dehydrogenase.
  
  0.493
AIY15630.1
acyl-CoA dehydrogenase.
  
  0.469
AIY19976.2
Hypothetical protein.
   
  0.467
AIY18856.1
Ankyrin repeat.
 
 0.460
AIY19504.1
20-beta-hydroxysteroid dehydrogenase.
 
  0.451
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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