STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marRTranscriptional regulator, MarR family. (173 aa)    
Predicted Functional Partners:
AJR18631.1
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1.
   
  
 0.684
AIY19122.1
Acetyl-coenzyme A synthetase.
    
 0.673
AIY17580.1
Iron-sulfur cluster regulator SufR.
   
    0.633
AIY17638.1
Hypothetical protein.
   
    0.601
cobB_2
NAD-dependent protein deacetylase of SIR2 family; Belongs to the sirtuin family. Class III subfamily.
  
    0.599
cobB_1
NAD-dependent protein deacetylase of SIR2 family.
  
    0.599
mcm
B12 binding domain; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
       0.595
AIY19316.1
Transcriptional regulator.
   
    0.566
AIY20066.2
Transcriptional regulator, TetR family.
 
 
    0.563
iciA
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.494
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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