STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY19153.2Putative transmembrane protein. (307 aa)    
Predicted Functional Partners:
fprB
Ferredoxin.
 
  
 0.922
AIY19155.1
Transcriptional regulator, TetR family.
 
     0.827
AIY16021.2
Transcriptional regulator, TetR family.
  
     0.722
AIY19156.1
Monooxygenase, flavin-binding family.
       0.664
AIY19384.1
Phenylacetic acid degradation operon negative regulatory protein PaaX.
 
  
 0.610
AIY20154.2
Regulatory protein.
  
     0.578
AJR18364.1
Hypothetical protein.
  
     0.570
AIY19594.1
Hypothetical protein.
  
     0.570
AIY17409.1
Phenylacetic acid degradation operon negative regulatory protein paaX.
 
  
 0.525
AIY15733.1
Hypothetical protein.
  
     0.498
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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