STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fprBFerredoxin. (563 aa)    
Predicted Functional Partners:
AIY17233.1
Glutamate synthase [NADPH] large chain.
  
 
 0.999
AJR18097.1
2-oxoglutarate oxidoreductase, alpha subunit.
  
 
 0.962
korA
2-oxoglutarate oxidoreductase, alpha subunit.
  
 
 0.962
AIY19141.1
2-polyprenylphenol hydroxylase-related flavodoxin oxidoreductase.
   
 0.958
AIY19255.1
Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
  
 
 0.949
AIY19153.2
Putative transmembrane protein.
 
  
 0.910
nuoF
NADH-ubiquinone oxidoreductase chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
 
 
 0.855
AIY16104.1
NADH-ubiquinone oxidoreductase chain E.
 
 
 0.847
AIY19196.2
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Belongs to the cytochrome P450 family.
   
 0.833
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 
 0.819
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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