STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY20172.2Membrane protein, distant similarity to thiosulfate:quinone oxidoreductase DoxD. (178 aa)    
Predicted Functional Partners:
AIY19173.1
Lipoprotein.
  
    0.545
AIY19171.1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
       0.543
AJR18769.1
Branched-chain amino acid transport ATP-binding protein LivG.
       0.543
AIY19172.1
Branched-chain amino acid transport ATP-binding protein LivF.
       0.543
AJR18768.1
Long-chain-fatty-acid--CoA ligase.
  
    0.542
AIY19169.1
O-succinylbenzoic acid--CoA ligase.
  
    0.538
AIY19170.2
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
       0.530
AJR18770.1
Chitinase.
  
    0.493
AJR18600.1
Putative RuBisCo-expression protein CbbX.
    
 0.484
AIY19168.1
Transcriptional regulator, GntR family.
     
 0.483
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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