STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18773.1Metallo-dependent hydrolase, subgroup B. (386 aa)    
Predicted Functional Partners:
AJR18772.1
Hypothetical protein.
 
     0.933
AIY19195.2
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.887
AIY19205.1
2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC).
 
     0.661
AJR18774.1
Fumarylacetoacetate hydrolase family protein.
       0.616
AIY19196.2
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Belongs to the cytochrome P450 family.
 
     0.502
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
  
  
 0.498
AJR18780.1
3-phenylpropionate dioxygenase beta subunit.
 
     0.488
AIY19208.1
Transcriptional regulator, IclR family.
 
     0.443
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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