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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY19227.1Putative oxidoreductase YncB. (343 aa)    
Predicted Functional Partners:
AIY19228.1
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.808
cyp127A1
Cytochrome P450.
       0.757
AIY17055.1
Putative oxidoreductase.
 
  
 0.577
AIY19396.1
FadB4.
 
  
 0.524
AIY19225.1
ABC amino acid transporter, substrate-binding component CamA; Uptake of 1-beta(2'-propanoate)-3a-alpha-H-4-alpha(3''(R)-hydroxy- 3''-propanoate)-7a-beta-methylhexahydro-5-indanone.
       0.506
AIY15871.2
acyl-CoA dehydrogenase/aminoglycoside phosphotransferase.
 
    0.492
AIY16685.2
Alcohol dehydrogenase, zinc-binding.
 
  
 0.463
AIY15780.1
Oxidoreductase of aldo/keto reductase family, subgroup 1.
   
 
 0.458
AIY19043.1
Oxidoreductase of aldo/keto reductase family, subgroup 1.
   
 
 0.458
AIY19264.1
Alcohol dehydrogenase.
 
  
 0.458
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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