STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dldGlycolate dehydrogenase, subunit GlcD. (469 aa)    
Predicted Functional Partners:
AIY19294.1
4-hydroxy-2-oxoglutarate aldolase, 2-dehydro-3-deoxyphosphogluconate aldolase.
  
 
 0.909
AIY17620.1
GMP synthase [glutamine-hydrolyzing].
    
 0.908
AIY19631.2
Glycolate dehydrogenase, subunit GlcD.
  
  
 
0.906
citE_2
Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
     
  0.900
AIY20183.2
Putative esterase.
       0.774
AIY19299.2
Hypothetical protein.
     
 0.557
AIY18172.2
Electron transfer flavoprotein, beta subunit.
 
 
 0.520
AIY19298.1
Sarcosine oxidase beta subunit.
     
 0.515
AIY18171.1
Electron transfer flavoprotein, alpha subunit.
 
 
 0.514
AIY19297.1
Formaldehyde dehydrogenase MscR, NAD/mycothiol-dependent.
  
  
 0.508
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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