STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18821.1Hypothetical protein. (387 aa)    
Predicted Functional Partners:
AJR18579.1
Fibronectin type III domain protein.
  
     0.627
AIY16763.1
Hypothetical protein.
 
    0.604
hmgL
Hydroxymethylglutaryl-CoA lyase.
       0.602
AIY19381.1
Methylcrotonyl-CoA carboxylase biotin-containing subunit.
       0.601
AIY20198.2
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.
       0.601
AIY19059.1
Na(+)/H(+) antiporter.
  
     0.535
AJR18822.1
Hypothetical protein.
       0.527
AIY19378.1
Hypothetical protein.
       0.523
AIY19379.1
Hypothetical protein.
       0.521
AIY18766.1
Putative integral membrane.
  
     0.514
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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