STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY19464.1Transcriptional regulator, TetR family. (207 aa)    
Predicted Functional Partners:
AIY19357.1
Cyclohexanone monooxygenase.
  
     0.701
AIY16425.1
Protein of unknown function UPF0089; Belongs to the long-chain O-acyltransferase family.
 
     0.678
AIY17321.1
Transcriptional regulator, TetR family.
  
   
 0.628
AIY20212.2
Hypothetical protein.
       0.561
AIY20146.2
Hypothetical protein.
  
     0.544
AIY16290.1
Hypothetical protein.
  
     0.525
AIY19163.1
Transcriptional regulator, TetR family.
 
      0.509
AIY18532.2
Hydrolase of the alpha/beta superfamily.
  
     0.507
AIY15676.1
Phosphoglycerate mutase family protein.
  
     0.492
AJR18594.1
Secreted lipase.
  
     0.492
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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