STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF40072.1Outer membrane protein. (214 aa)    
Predicted Functional Partners:
ABF42010.1
Cyclase/dehydrase.
  
    0.636
ABF40802.1
Protein of unknown function DUF1452.
  
    0.552
ABF40487.1
Trehalose synthase.
  
    0.519
ABF41546.1
Protein of unknown function DUF892.
 
    0.506
ABF41858.1
Protein of unknown function DUF892.
 
    0.502
ABF39817.1
Cyclase/dehydrase.
  
    0.496
ABF41865.1
Hypothetical protein.
  
     0.470
ABF41866.1
Metallophosphoesterase.
  
     0.451
ABF42011.1
Alcohol dehydrogenase GroES-like protein.
  
    0.439
ABF40071.1
Hydrophobe/amphiphile efflux-1 HAE1; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.407
Your Current Organism:
Koribacter versatilis
NCBI taxonomy Id: 204669
Other names: Acidobacteria bacterium Ellin345, C. Koribacter versatilis Ellin345, Candidatus Koribacter versatilis Ellin345, Koribacter versatilis Ellin345, bacterium Ellin345
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