STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF40709.1ABC efflux pump, inner membrane subunit. (888 aa)    
Predicted Functional Partners:
ABF39371.1
Secretion protein HlyD.
  
    0.818
ABF40708.1
Transcriptional regulator, PadR family.
 
     0.809
ABF39372.1
ABC transporter, ATPase subunit.
 
   0.777
ABF39380.1
Periplasmic sensor signal transduction histidine kinase.
  
     0.740
ABF39377.1
ABC transporter, ATPase subunit.
  
   0.736
ABF42324.1
Secretion protein HlyD.
  
    0.673
ABF42325.1
ABC transporter, ATPase subunit.
  
   0.649
ABF43631.1
ABC efflux pump, inner membrane subunit.
  
     0.649
ABF40507.1
ABC efflux pump, inner membrane subunit.
  
     0.641
ABF42532.1
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.598
Your Current Organism:
Koribacter versatilis
NCBI taxonomy Id: 204669
Other names: Acidobacteria bacterium Ellin345, C. Koribacter versatilis Ellin345, Candidatus Koribacter versatilis Ellin345, Koribacter versatilis Ellin345, bacterium Ellin345
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.