STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF40999.1General secretion pathway protein G. (140 aa)    
Predicted Functional Partners:
ABF41000.1
General secretion pathway protein G.
 
  
 
0.982
ABF40180.1
Methylation.
  
  
  0.927
ABF40998.1
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.903
ABF40582.1
Hypothetical protein.
 
     0.779
ABF40579.1
Hypothetical protein.
 
  
 0.752
ABF41523.1
TPR repeat protein; Belongs to the bacterial secretin family.
 
  
 0.745
ABF40472.1
Fimbrial assembly protein.
 
  
 0.615
ABF39776.1
Hypothetical protein.
 
     0.600
ABF40578.1
Type II secretion system protein E.
 
 
 0.598
atpF
H+-transporting two-sector ATPase, B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.582
Your Current Organism:
Koribacter versatilis
NCBI taxonomy Id: 204669
Other names: Acidobacteria bacterium Ellin345, C. Koribacter versatilis Ellin345, Candidatus Koribacter versatilis Ellin345, Koribacter versatilis Ellin345, bacterium Ellin345
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