STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF41909.1Putative secreted glycosyl hydrolase. (266 aa)    
Predicted Functional Partners:
ABF41908.1
40-residue YVTN beta-propeller repeat protein.
 
    
0.818
ABF40487.1
Trehalose synthase.
   
    0.739
ABF41911.1
Major facilitator superfamily (MFS) transporter.
 
     0.656
ABF43311.1
Dehydrogenases related protein.
 
     0.637
ABF39965.1
Glycosyl hydrolase, family 88.
  
     0.628
ABF41910.1
Glucosamine/galactosamine-6-phosphate isomerase.
 
     0.616
ABF41326.1
Oxidoreductase.
 
     0.584
ABF41325.1
Protein of unknown function DUF1080.
 
     0.582
glgA
Glycogen synthase (ADP-glucose); Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.579
ABF41761.1
Hypothetical protein.
  
     0.566
Your Current Organism:
Koribacter versatilis
NCBI taxonomy Id: 204669
Other names: Acidobacteria bacterium Ellin345, C. Koribacter versatilis Ellin345, Candidatus Koribacter versatilis Ellin345, Koribacter versatilis Ellin345, bacterium Ellin345
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