STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF42207.1Hypothetical protein; Possible subunit of a heme lyase. (161 aa)    
Predicted Functional Partners:
ABF42208.1
Cytochrome c assembly protein.
 
  
 0.970
ABF42206.1
Hypothetical protein.
       0.800
ABF41306.1
Cytochrome c-type biogenesis protein, CcmE-like protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
  
 0.781
ABF41304.1
Cytochrome c-type biogenesis protein CcmB.
 
   
 0.724
ABF42205.1
Hypothetical protein.
       0.685
ABF41303.1
Cytochrome c assembly protein.
 
   
 0.610
ABF40830.1
TPR repeat protein.
 
  
 0.563
secE
SecE subunit of protein translocation complex; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.501
ABF43651.1
Membrane-bound metal-dependent hydrolase.
  
     0.496
ABF39401.1
Hypothetical protein.
  
     0.493
Your Current Organism:
Koribacter versatilis
NCBI taxonomy Id: 204669
Other names: Acidobacteria bacterium Ellin345, C. Koribacter versatilis Ellin345, Candidatus Koribacter versatilis Ellin345, Koribacter versatilis Ellin345, bacterium Ellin345
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.