STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF43403.1Metal dependent phosphohydrolase. (319 aa)    
Predicted Functional Partners:
ABF43131.1
Diguanylate cyclase.
 
 
 0.949
ABF42660.1
Diguanylate cyclase with GAF sensor.
 
 0.866
ABF43523.1
Diguanylate cyclase with GAF sensor.
 
 0.826
ABF40961.1
Diguanylate cyclase with PAS/PAC sensor.
 
 0.823
ABF39209.1
Diguanylate cyclase.
   
 0.805
ABF39588.1
Diguanylate cyclase with GAF sensor.
 
 
 0.783
ABF40367.1
Diguanylate cyclase.
 
 
 0.779
ABF42843.1
Diguanylate cyclase.
 
 
 0.755
ABF43402.1
Hypothetical protein.
       0.697
ABF43059.1
PAS/PAC sensor hybrid histidine kinase.
 
   
 0.565
Your Current Organism:
Koribacter versatilis
NCBI taxonomy Id: 204669
Other names: Acidobacteria bacterium Ellin345, C. Koribacter versatilis Ellin345, Candidatus Koribacter versatilis Ellin345, Koribacter versatilis Ellin345, bacterium Ellin345
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.