Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABF43591.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
ABF40040.1
Hypothetical protein.
  
     0.709
ABF42333.1
Hypothetical protein.
  
     0.633
ABF41672.1
Hypothetical protein.
  
     0.630
ABF41761.1
Hypothetical protein.
  
     0.578
ABF42953.1
Hypothetical protein.
  
     0.575
ABF42332.1
Hypothetical protein.
  
     0.562
ABF43525.1
Peptidase S7, flavivirus helicase (NS3).
 
    0.533
ABF41497.1
Sigma-24, ECF subfamily.
  
     0.529
ABF41099.1
Conserved hypothetical protein.
  
     0.525
ABF39741.1
Tetratricopeptide repeat protein.
  
     0.491
Your Current Organism:
Koribacter versatilis
NCBI taxonomy Id: 204669
Other names: Acidobacteria bacterium Ellin345, C. Koribacter versatilis Ellin345, Candidatus Koribacter versatilis Ellin345, Koribacter versatilis Ellin345, bacterium Ellin345
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