STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HEAR0731Putative phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (191 aa)    
Predicted Functional Partners:
fadD
Long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.710
HEAR2603
Hypothetical protein; No homology to any previously reported sequences.
    
 0.710
rplF
50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.710
HEAR2827
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.699
HEAR0622
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.646
HEAR2226
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.540
HEAR2168
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.530
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.518
HEAR2555
Putative porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.518
HEAR0127
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.513
Your Current Organism:
Herminiimonas arsenicoxydans
NCBI taxonomy Id: 204773
Other names: CCM 7303, DSM 17148, H. arsenicoxydans, Herminiimonas arsenicoxydans Muller et al. 2006, LMG 22961, LMG:22961, strain ULPAs1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.