Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
risSSensor protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (455 aa)    
Predicted Functional Partners:
ompR1
Transcriptional regulatory protein OmpR; Function of strongly homologous gene; regulator.
 
 0.994
HEAR0889
Putative two-component system sensory histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.832
ompR2
Transcriptional regulatory protein OmpR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.750
tctD
Transcriptional regulatory protein TctD; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.739
lpdA
Dihydrolipoyl dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.726
pilH
Twitching motility two-component response regulator transcription regulator protein PilH; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
   0.726
phoB2
Phosphate regulon transcriptional regulatory protein PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.724
phoB1
Phosphate regulon transcriptional regulatory protein PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.719
HEAR2689
Putative transcriptional regulatory protein TctD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.679
HEAR0051
Putative Two-component system regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.664
Your Current Organism:
Herminiimonas arsenicoxydans
NCBI taxonomy Id: 204773
Other names: CCM 7303, DSM 17148, H. arsenicoxydans, Herminiimonas arsenicoxydans Muller et al. 2006, LMG 22961, LMG:22961, strain ULPAs1
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