STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbD2Biopolymer transport protein (ExbD); Function of homologous gene experimentally demonstrated in an other organism; transporter. (127 aa)    
Predicted Functional Partners:
HEAR2658
Putative biopolymer transport ExbB protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.977
exbB
Biopolymer transport exbB protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.938
HEAR0319
Putative Periplasmic protein TonB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.905
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.902
HEAR2660
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.802
HEAR2492
Putative biopolymer transport protein ExbB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.704
HEAR2754
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.686
HEAR3356
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.686
pal
Putative peptidoglycan-associated lipoprotein precursor pal-like; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.647
HEAR1767
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.644
Your Current Organism:
Herminiimonas arsenicoxydans
NCBI taxonomy Id: 204773
Other names: CCM 7303, DSM 17148, H. arsenicoxydans, Herminiimonas arsenicoxydans Muller et al. 2006, LMG 22961, LMG:22961, strain ULPAs1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.