STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO67_19085Capsular biosynthesis protein. (427 aa)    
Predicted Functional Partners:
ATO67_19105
Beta-ketoacyl synthase.
 
     0.928
ATO67_19090
Capsular biosynthesis protein.
 
   
 0.921
ATO67_19070
Uncharacterized protein.
 
 
 
 0.898
ATO67_19060
Uncharacterized protein.
 
 
 
 0.887
ATO67_19065
ABC transporter ATP-binding protein.
 
   
 0.866
ATO67_19110
Capsule biosynthesis protein.
 
   
 0.851
ATO67_19055
Capsular biosynthesis protein.
 
   
 0.850
ATO67_19100
8-amino-7-oxononanoate synthase.
 
     0.804
flgF
Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
    
   0.795
ATO67_19095
Translocation protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.761
Your Current Organism:
Agrobacterium bohemicum
NCBI taxonomy Id: 2052828
Other names: A. bohemicum, Agrobacterium sp. R89-1, Agrobacterium sp. R90, CCM 8736, DSM 104667, strain R90
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