STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANY26085.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)    
Predicted Functional Partners:
ANY23735.1
Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
ANY23734.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.672
ANY21566.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.596
ANY25705.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.575
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.511
ANY23733.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.506
ANY23732.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.504
ANY26267.1
MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.479
ANY24763.1
Glycerol acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.443
ANY25382.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.425
Your Current Organism:
Gordonia terrae
NCBI taxonomy Id: 2055
Other names: ATCC 25594, CCUG 34959, CIP 104295, DSM 43249, G. terrae, Gordona terrae, Gordonia sp. IIPN1, Gordonia terrae K, JCM 3206, JCM 3229, LMG 5369, LMG:5369, Methylobacteriaceae bacterium GB31, Methylobacteriaceae bacterium GX1, Methylobacteriaceae bacterium ST1, NBRC 100016, NCTC 10669, NRRL B-16283, Rhodococcus terrae, Rothia sp. K, strain 3612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.