EVG20_g8584 protein (Dentipellis fragilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EVG20_g8584

CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (425 aa)

Predicted Functional Partners:

EVG20_g8411

0.951

EVG20_g7201

0.895

EVG20_g3002

0.886

EVG20_g1265

0.874

EVG20_g2497

0.854

EVG20_g503

0.850

EVG20_g7733

0.846

EVG20_g1089

0.845

EVG20_g1583

0.824

EVG20_g9850

0.810

Your Current Organism:

Dentipellis fragilis

NCBI taxonomy Id: 205917
Other names: D. fragilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EVG20_g1089	EVG20_g1265	A0A4Y9ZAP1	A0A4Y9ZB05	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Nucleoside diphosphate kinase.	0.856
EVG20_g1089	EVG20_g1583	A0A4Y9ZAP1	A0A4Y9ZCA2	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.853
EVG20_g1089	EVG20_g2497	A0A4Y9ZAP1	A0A4Y9Z6L6	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ribosomal_L23eN domain-containing protein.	0.999
EVG20_g1089	EVG20_g3002	A0A4Y9ZAP1	A0A4Y9Z6N3	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	DALR_1 domain-containing protein.	0.851
EVG20_g1089	EVG20_g503	A0A4Y9ZAP1	A0A4Y9ZCF3	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	AA_TRNA_LIGASE_II domain-containing protein.	0.573
EVG20_g1089	EVG20_g7201	A0A4Y9ZAP1	A0A4Y9YER1	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
EVG20_g1089	EVG20_g7733	A0A4Y9ZAP1	A0A4Y9YAS5	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
EVG20_g1089	EVG20_g8411	A0A4Y9ZAP1	A0A4Y9Y611	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Glutamine amidotransferase type-1 domain-containing protein.	0.845
EVG20_g1089	EVG20_g8584	A0A4Y9ZAP1	A0A4Y9Y940	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.845
EVG20_g1089	EVG20_g9850	A0A4Y9ZAP1	A0A4Y9XXD5	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ribosomal_L18_c domain-containing protein.	0.999
EVG20_g1265	EVG20_g1089	A0A4Y9ZB05	A0A4Y9ZAP1	Nucleoside diphosphate kinase.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.856
EVG20_g1265	EVG20_g1583	A0A4Y9ZB05	A0A4Y9ZCA2	Nucleoside diphosphate kinase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.555
EVG20_g1265	EVG20_g2497	A0A4Y9ZB05	A0A4Y9Z6L6	Nucleoside diphosphate kinase.	Ribosomal_L23eN domain-containing protein.	0.633
EVG20_g1265	EVG20_g503	A0A4Y9ZB05	A0A4Y9ZCF3	Nucleoside diphosphate kinase.	AA_TRNA_LIGASE_II domain-containing protein.	0.420
EVG20_g1265	EVG20_g7201	A0A4Y9ZB05	A0A4Y9YER1	Nucleoside diphosphate kinase.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.561
EVG20_g1265	EVG20_g7733	A0A4Y9ZB05	A0A4Y9YAS5	Nucleoside diphosphate kinase.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.850
EVG20_g1265	EVG20_g8411	A0A4Y9ZB05	A0A4Y9Y611	Nucleoside diphosphate kinase.	Glutamine amidotransferase type-1 domain-containing protein.	0.874
EVG20_g1265	EVG20_g8584	A0A4Y9ZB05	A0A4Y9Y940	Nucleoside diphosphate kinase.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.874
EVG20_g1265	EVG20_g9850	A0A4Y9ZB05	A0A4Y9XXD5	Nucleoside diphosphate kinase.	Ribosomal_L18_c domain-containing protein.	0.633
EVG20_g1583	EVG20_g1089	A0A4Y9ZCA2	A0A4Y9ZAP1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.853