Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0314 | Psyr_0400 | Psyr_0314 | Psyr_0400 | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Nuclease (SNase-like). | 0.445 |
Psyr_0314 | Psyr_0410 | Psyr_0314 | Psyr_0410 | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Conserved hypothetical protein. | 0.572 |
Psyr_0396 | Psyr_0400 | Psyr_0396 | Psyr_0400 | Sporulation related protein. | Nuclease (SNase-like). | 0.524 |
Psyr_0396 | priA | Psyr_0396 | Psyr_0398 | Sporulation related protein. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.649 |
Psyr_0396 | rpmE | Psyr_0396 | Psyr_0399 | Sporulation related protein. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.431 |
Psyr_0400 | Psyr_0314 | Psyr_0400 | Psyr_0314 | Nuclease (SNase-like). | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.445 |
Psyr_0400 | Psyr_0396 | Psyr_0400 | Psyr_0396 | Nuclease (SNase-like). | Sporulation related protein. | 0.524 |
Psyr_0400 | Psyr_0401 | Psyr_0400 | Psyr_0401 | Nuclease (SNase-like). | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+). | 0.507 |
Psyr_0400 | Psyr_0410 | Psyr_0400 | Psyr_0410 | Nuclease (SNase-like). | Conserved hypothetical protein. | 0.422 |
Psyr_0400 | Psyr_1276 | Psyr_0400 | Psyr_1276 | Nuclease (SNase-like). | Conserved hypothetical protein. | 0.428 |
Psyr_0400 | Psyr_4462 | Psyr_0400 | Psyr_4462 | Nuclease (SNase-like). | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.461 |
Psyr_0400 | priA | Psyr_0400 | Psyr_0398 | Nuclease (SNase-like). | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.544 |
Psyr_0400 | rnpA | Psyr_0400 | Psyr_5136 | Nuclease (SNase-like). | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.647 |
Psyr_0400 | rpmE | Psyr_0400 | Psyr_0399 | Nuclease (SNase-like). | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.774 |
Psyr_0400 | topA | Psyr_0400 | Psyr_3287 | Nuclease (SNase-like). | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.481 |
Psyr_0401 | Psyr_0400 | Psyr_0401 | Psyr_0400 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+). | Nuclease (SNase-like). | 0.507 |
Psyr_0401 | rpmE | Psyr_0401 | Psyr_0399 | Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+). | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.493 |
Psyr_0410 | Psyr_0314 | Psyr_0410 | Psyr_0314 | Conserved hypothetical protein. | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.572 |
Psyr_0410 | Psyr_0400 | Psyr_0410 | Psyr_0400 | Conserved hypothetical protein. | Nuclease (SNase-like). | 0.422 |
Psyr_1276 | Psyr_0400 | Psyr_1276 | Psyr_0400 | Conserved hypothetical protein. | Nuclease (SNase-like). | 0.428 |
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