STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1012Glycosyl transferase, group 1. (406 aa)    
Predicted Functional Partners:
Psyr_3595
Metallophosphoesterase.
  
 0.926
Psyr_4662
Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.532
Psyr_3301
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.526
Psyr_1794
Amino acid adenylation.
  
 
 0.472
Psyr_3231
Sugar transferase.
  
  
 0.459
Psyr_1013
Hypothetical protein.
       0.456
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.456
Psyr_2993
Maltooligosyl trehalose hydrolase.
   
 0.456
Psyr_3304
Lipopolysaccharide biosynthesis.
 
  
 0.420
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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