STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_1598Diguanylate cyclase/phosphodiesterase. (590 aa)    
Predicted Functional Partners:
Psyr_1292
Multi-sensor hybrid histidine kinase.
 
 
 0.900
Psyr_2940
PAS.
  
 
 0.887
Psyr_2445
Multi-sensor hybrid histidine kinase.
  
  
 0.879
Psyr_2113
Multi-sensor hybrid histidine kinase.
 
  
 0.876
Psyr_1157
Diguanylate cyclase with PAS/PAC sensor.
 
 0.835
Psyr_0088
PAS:GGDEF.
 
 0.834
Psyr_3698
Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt.
  
  
 0.832
Psyr_1654
Type IV pilus assembly PilZ.
    
   0.825
Psyr_2110
Diguanylate cyclase with PAS/PAC sensor.
 
 
 0.818
Psyr_0509
PAS:GGDEF.
 
 
0.816
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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