STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2367ABC-3. (289 aa)    
Predicted Functional Partners:
Psyr_2368
Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.994
Psyr_2366
ABC transporter.
 
 
 0.983
Psyr_1951
Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.876
Psyr_1950
ABC transporter.
 
 
 0.831
Psyr_0275
Periplasmic solute binding protein.
 
  
 0.811
phcA
PhcA; See PMID:18363647.
      
 0.760
znuC
ABC transporter; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
 
 0.719
Psyr_1948
ABC transporter, periplasmic substrate-binding protein, putative.
 
  
 0.573
Psyr_1949
ABC-3.
  
  
 
0.530
Psyr_0278
ABC-3.
  
  
 
0.488
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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