Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AmpC | Psyr_3363 | Psyr_3364 | Psyr_3363 | Beta-lactamase. | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | 0.528 |
Psyr_0288 | Psyr_3363 | Psyr_0288 | Psyr_3363 | Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | 0.594 |
Psyr_0355 | Psyr_3208 | Psyr_0355 | Psyr_3208 | Conserved hypothetical protein. | NADH dehydrogenase subunit M. | 0.833 |
Psyr_0355 | Psyr_3363 | Psyr_0355 | Psyr_3363 | Conserved hypothetical protein. | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | 0.503 |
Psyr_0504 | Psyr_3208 | Psyr_0504 | Psyr_3208 | Conserved domain protein. | NADH dehydrogenase subunit M. | 0.539 |
Psyr_0504 | Psyr_3363 | Psyr_0504 | Psyr_3363 | Conserved domain protein. | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | 0.450 |
Psyr_0504 | sbcD | Psyr_0504 | Psyr_1715 | Conserved domain protein. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.583 |
Psyr_1860 | Psyr_3208 | Psyr_1860 | Psyr_3208 | Ankyrin. | NADH dehydrogenase subunit M. | 0.539 |
Psyr_1860 | Psyr_3363 | Psyr_1860 | Psyr_3363 | Ankyrin. | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | 0.450 |
Psyr_1860 | sbcD | Psyr_1860 | Psyr_1715 | Ankyrin. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.583 |
Psyr_3208 | Psyr_0355 | Psyr_3208 | Psyr_0355 | NADH dehydrogenase subunit M. | Conserved hypothetical protein. | 0.833 |
Psyr_3208 | Psyr_0504 | Psyr_3208 | Psyr_0504 | NADH dehydrogenase subunit M. | Conserved domain protein. | 0.539 |
Psyr_3208 | Psyr_1860 | Psyr_3208 | Psyr_1860 | NADH dehydrogenase subunit M. | Ankyrin. | 0.539 |
Psyr_3208 | Psyr_3252 | Psyr_3208 | Psyr_3252 | NADH dehydrogenase subunit M. | Monovalent cation/H+ antiporter subunit A; TC 2.A.63.1.1; TC 2.A.63.1.1. | 0.961 |
Psyr_3208 | Psyr_3363 | Psyr_3208 | Psyr_3363 | NADH dehydrogenase subunit M. | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | 0.550 |
Psyr_3208 | acpP-2 | Psyr_3208 | Psyr_1648 | NADH dehydrogenase subunit M. | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.585 |
Psyr_3252 | Psyr_3208 | Psyr_3252 | Psyr_3208 | Monovalent cation/H+ antiporter subunit A; TC 2.A.63.1.1; TC 2.A.63.1.1. | NADH dehydrogenase subunit M. | 0.961 |
Psyr_3252 | Psyr_3363 | Psyr_3252 | Psyr_3363 | Monovalent cation/H+ antiporter subunit A; TC 2.A.63.1.1; TC 2.A.63.1.1. | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | 0.464 |
Psyr_3362 | Psyr_3363 | Psyr_3362 | Psyr_3363 | AFG1-like ATPase. | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | 0.562 |
Psyr_3363 | AmpC | Psyr_3363 | Psyr_3364 | Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter. | Beta-lactamase. | 0.528 |
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