Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psyr_3017 | Psyr_3506 | Conserved hypothetical protein. | Sulfatase. | 0.482 |
Psyr_3017 | Psyr_3508 | Conserved hypothetical protein. | Glycosyl hydrolase, BNR repeat protein. | 0.441 |
Psyr_3092 | Psyr_3506 | PAP2 superfamily protein. | Sulfatase. | 0.497 |
Psyr_3504 | Psyr_3505 | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal. | Heme oxygenase. | 0.951 |
Psyr_3504 | Psyr_3506 | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal. | Sulfatase. | 0.480 |
Psyr_3504 | Psyr_3508 | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal. | Glycosyl hydrolase, BNR repeat protein. | 0.545 |
Psyr_3504 | Psyr_3510 | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal. | Conserved hypothetical protein. | 0.417 |
Psyr_3504 | Psyr_3512 | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal. | ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal. | 0.502 |
Psyr_3505 | Psyr_3504 | Heme oxygenase. | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal. | 0.951 |
Psyr_3505 | Psyr_3506 | Heme oxygenase. | Sulfatase. | 0.525 |
Psyr_3505 | Psyr_3508 | Heme oxygenase. | Glycosyl hydrolase, BNR repeat protein. | 0.513 |
Psyr_3506 | Psyr_3017 | Sulfatase. | Conserved hypothetical protein. | 0.482 |
Psyr_3506 | Psyr_3092 | Sulfatase. | PAP2 superfamily protein. | 0.497 |
Psyr_3506 | Psyr_3504 | Sulfatase. | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal. | 0.480 |
Psyr_3506 | Psyr_3505 | Sulfatase. | Heme oxygenase. | 0.525 |
Psyr_3506 | Psyr_3507 | Sulfatase. | Membrane protein, putative. | 0.788 |
Psyr_3506 | Psyr_3508 | Sulfatase. | Glycosyl hydrolase, BNR repeat protein. | 0.931 |
Psyr_3506 | Psyr_3509 | Sulfatase. | Cytochrome B561, bacterial. | 0.667 |
Psyr_3506 | Psyr_3510 | Sulfatase. | Conserved hypothetical protein. | 0.655 |
Psyr_3506 | Psyr_3512 | Sulfatase. | ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal. | 0.543 |
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