STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3879Hypothetical protein. (184 aa)    
Predicted Functional Partners:
Psyr_3878
Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-.
       0.773
Psyr_3877
Succinylglutamate desuccinylase/aspartoacylase.
       0.762
Psyr_3875
Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.
       0.736
Psyr_3876
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
       0.736
Psyr_3874
Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family.
       0.533
Psyr_3880
Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal.
       0.407
Psyr_3881
Conserved hypothetical protein.
       0.407
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.