Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psyr_0509 | Psyr_1292 | PAS:GGDEF. | Multi-sensor hybrid histidine kinase. | 0.933 |
Psyr_0509 | Psyr_1938 | PAS:GGDEF. | Response regulator receiver. | 0.518 |
Psyr_0509 | Psyr_1939 | PAS:GGDEF. | PAS. | 0.892 |
Psyr_0509 | Psyr_2021 | PAS:GGDEF. | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal. | 0.700 |
Psyr_0509 | Psyr_2113 | PAS:GGDEF. | Multi-sensor hybrid histidine kinase. | 0.844 |
Psyr_0509 | Psyr_2940 | PAS:GGDEF. | PAS. | 0.924 |
Psyr_0509 | Psyr_3698 | PAS:GGDEF. | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | 0.813 |
Psyr_0509 | Psyr_4373 | PAS:GGDEF. | PAS. | 0.770 |
Psyr_0509 | Psyr_4701 | PAS:GGDEF. | Response regulator receiver. | 0.610 |
Psyr_1292 | Psyr_0509 | Multi-sensor hybrid histidine kinase. | PAS:GGDEF. | 0.933 |
Psyr_1292 | Psyr_1938 | Multi-sensor hybrid histidine kinase. | Response regulator receiver. | 0.983 |
Psyr_1292 | Psyr_1939 | Multi-sensor hybrid histidine kinase. | PAS. | 0.999 |
Psyr_1292 | Psyr_2021 | Multi-sensor hybrid histidine kinase. | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal. | 0.961 |
Psyr_1292 | Psyr_2113 | Multi-sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.999 |
Psyr_1292 | Psyr_2940 | Multi-sensor hybrid histidine kinase. | PAS. | 0.999 |
Psyr_1292 | Psyr_3589 | Multi-sensor hybrid histidine kinase. | Response regulator receiver:Transcriptional regulatory protein, C-terminal. | 0.843 |
Psyr_1292 | Psyr_3698 | Multi-sensor hybrid histidine kinase. | Histidine kinase; Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt. | 0.992 |
Psyr_1292 | Psyr_4373 | Multi-sensor hybrid histidine kinase. | PAS. | 0.909 |
Psyr_1292 | Psyr_4701 | Multi-sensor hybrid histidine kinase. | Response regulator receiver. | 0.749 |
Psyr_1938 | Psyr_0509 | Response regulator receiver. | PAS:GGDEF. | 0.518 |
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