Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0504 | Psyr_1717 | Psyr_0504 | Psyr_1717 | Conserved domain protein. | TPR repeat:von Willebrand factor, type A. | 0.550 |
Psyr_0504 | Psyr_2426 | Psyr_0504 | Psyr_2426 | Conserved domain protein. | Conserved domain protein. | 0.550 |
Psyr_0504 | betA | Psyr_0504 | Psyr_4732 | Conserved domain protein. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.679 |
Psyr_1717 | Psyr_0504 | Psyr_1717 | Psyr_0504 | TPR repeat:von Willebrand factor, type A. | Conserved domain protein. | 0.550 |
Psyr_1717 | Psyr_1860 | Psyr_1717 | Psyr_1860 | TPR repeat:von Willebrand factor, type A. | Ankyrin. | 0.550 |
Psyr_1717 | Psyr_3354 | Psyr_1717 | Psyr_3354 | TPR repeat:von Willebrand factor, type A. | Ankyrin. | 0.550 |
Psyr_1717 | betA | Psyr_1717 | Psyr_4732 | TPR repeat:von Willebrand factor, type A. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.660 |
Psyr_1860 | Psyr_1717 | Psyr_1860 | Psyr_1717 | Ankyrin. | TPR repeat:von Willebrand factor, type A. | 0.550 |
Psyr_1860 | Psyr_2426 | Psyr_1860 | Psyr_2426 | Ankyrin. | Conserved domain protein. | 0.550 |
Psyr_1860 | betA | Psyr_1860 | Psyr_4732 | Ankyrin. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.679 |
Psyr_2426 | Psyr_0504 | Psyr_2426 | Psyr_0504 | Conserved domain protein. | Conserved domain protein. | 0.550 |
Psyr_2426 | Psyr_1860 | Psyr_2426 | Psyr_1860 | Conserved domain protein. | Ankyrin. | 0.550 |
Psyr_2426 | Psyr_3354 | Psyr_2426 | Psyr_3354 | Conserved domain protein. | Ankyrin. | 0.550 |
Psyr_2426 | betA | Psyr_2426 | Psyr_4732 | Conserved domain protein. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.660 |
Psyr_3354 | Psyr_1717 | Psyr_3354 | Psyr_1717 | Ankyrin. | TPR repeat:von Willebrand factor, type A. | 0.550 |
Psyr_3354 | Psyr_2426 | Psyr_3354 | Psyr_2426 | Ankyrin. | Conserved domain protein. | 0.550 |
Psyr_3354 | betA | Psyr_3354 | Psyr_4732 | Ankyrin. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.679 |
Psyr_3416 | betA | Psyr_3416 | Psyr_4732 | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.746 |
Psyr_4730 | betA | Psyr_4730 | Psyr_4732 | FecR protein. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.676 |
Psyr_4730 | betB | Psyr_4730 | Psyr_4733 | FecR protein. | Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.576 |
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