Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECH_0183Identified by match to protein family HMM PF02470. (149 aa)    
Predicted Functional Partners:
ECH_0084
Conserved hypothetical protein; Identified by similarity to GB:AAS14650.1; match to protein family HMM PF02405.
 
 0.995
ECH_0085
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.988
ECH_0069
Conserved hypothetical protein; Identified by similarity to GB:AAK25655.1.
  
 0.986
ECH_0184
Identified by match to protein family HMM PF05071.
       0.770
nrdR
ATP cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
       0.492
ECH_0181
Hypothetical protein; Identified by Glimmer2; putative.
       0.466
ECH_0182
Hypothetical protein; Identified by Glimmer2; putative.
       0.440
Your Current Organism:
Ehrlichia chaffeensis
NCBI taxonomy Id: 205920
Other names: E. chaffeensis str. Arkansas, Ehrlichia chaffeensis Arkansas, Ehrlichia chaffeensis str. Arkansas
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