STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECH_0184Identified by match to protein family HMM PF05071. (97 aa)    
Predicted Functional Partners:
ECH_0183
Identified by match to protein family HMM PF02470.
       0.767
ECH_0213
Putative oxidoreductase; Identified by match to protein family HMM PF04800.
  
    0.705
ECH_0232
Tim44-like domain protein; Identified by similarity to GB:AAS13862.1; match to protein family HMM PF04280.
  
     0.611
ECH_0744
Conserved hypothetical protein; Identified by similarity to PIR:F71632; match to protein family HMM PF07031.
 
   
 0.592
nrdR
ATP cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
       0.536
ECH_0337
Putative cell division protein FtsQ; Essential cell division protein.
  
     0.471
ihfB
Integration host factor, beta subunit; Identified by similarity to SP:Q06607; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.
  
     0.446
recO
Putative DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.425
ECH_0347
Peptidase, M48 family; Identified by match to protein family HMM PF01435.
  
     0.420
ECH_0181
Hypothetical protein; Identified by Glimmer2; putative.
       0.410
Your Current Organism:
Ehrlichia chaffeensis
NCBI taxonomy Id: 205920
Other names: E. chaffeensis str. Arkansas, Ehrlichia chaffeensis Arkansas, Ehrlichia chaffeensis str. Arkansas
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.