Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECH_0576Conserved hypothetical protein; Identified by similarity to SP:O05113. (93 aa)    
Predicted Functional Partners:
ECH_0744
Conserved hypothetical protein; Identified by similarity to PIR:F71632; match to protein family HMM PF07031.
  
   
 0.772
recO
Putative DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.750
ECH_0199
Conserved hypothetical protein; Identified by similarity to PIR:G97712; match to protein family HMM PF06242.
  
   
 0.681
ECH_0232
Tim44-like domain protein; Identified by similarity to GB:AAS13862.1; match to protein family HMM PF04280.
  
     0.638
ECH_0820
Conserved hypothetical protein; Identified by similarity to GB:AAS14586.1.
  
     0.630
ECH_0847
Identified by match to protein family HMM PF02798.
  
     0.629
rpsU
Ribosomal protein S21; Identified by match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.568
ECH_0874
Disulfide bond formation family protein; Identified by match to protein family HMM PF02600.
  
     0.493
ECH_0337
Putative cell division protein FtsQ; Essential cell division protein.
  
     0.456
hemD
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.419
Your Current Organism:
Ehrlichia chaffeensis
NCBI taxonomy Id: 205920
Other names: E. chaffeensis str. Arkansas, Ehrlichia chaffeensis Arkansas, Ehrlichia chaffeensis str. Arkansas
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