STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECH_0601Hypothetical protein; Identified by Glimmer2; putative. (374 aa)    
Predicted Functional Partners:
ECH_0230
Putative membrane protein; Identified by match to protein family HMM PF07690.
      
 0.569
ECH_0202
NifU domain protein; Identified by match to protein family HMM PF01106.
      
 0.567
ECH_0284
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.567
ECH_0754
O-methyltransferase; Identified by match to protein family HMM PF01596.
      
 0.567
lpdA-1
Dihydrolipoamide dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.
      
 0.565
ECH_0529
Identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765.
      
 0.565
ECH_0660
Conserved hypothetical protein; Identified by similarity to GB:AAS13837.1; match to protein family HMM TIGR02215.
      
 0.483
mutM
formamidopyrimidine-DNA glycosylase; Identified by similarity to SP:P05523; match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577.
       0.449
ECH_0603
Hypothetical protein; Identified by Glimmer2; putative.
       0.449
Your Current Organism:
Ehrlichia chaffeensis
NCBI taxonomy Id: 205920
Other names: E. chaffeensis str. Arkansas, Ehrlichia chaffeensis Arkansas, Ehrlichia chaffeensis str. Arkansas
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.