Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ECH_0653 | atpG | ECH_0653 | ECH_0652 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.758 |
ECH_0653 | folE | ECH_0653 | ECH_0651 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | GTP cyclohydrolase I; Identified by similarity to SP:Q54769; match to protein family HMM PF01227. | 0.592 |
ECH_0653 | pmbA | ECH_0653 | ECH_0650 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | pmbA protein; Identified by similarity to SP:P24231; match to protein family HMM PF01523. | 0.534 |
atpG | ECH_0653 | ECH_0652 | ECH_0653 | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | 0.758 |
atpG | folE | ECH_0652 | ECH_0651 | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | GTP cyclohydrolase I; Identified by similarity to SP:Q54769; match to protein family HMM PF01227. | 0.810 |
atpG | pmbA | ECH_0652 | ECH_0650 | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | pmbA protein; Identified by similarity to SP:P24231; match to protein family HMM PF01523. | 0.806 |
folE | ECH_0653 | ECH_0651 | ECH_0653 | GTP cyclohydrolase I; Identified by similarity to SP:Q54769; match to protein family HMM PF01227. | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | 0.592 |
folE | atpG | ECH_0651 | ECH_0652 | GTP cyclohydrolase I; Identified by similarity to SP:Q54769; match to protein family HMM PF01227. | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.810 |
folE | pmbA | ECH_0651 | ECH_0650 | GTP cyclohydrolase I; Identified by similarity to SP:Q54769; match to protein family HMM PF01227. | pmbA protein; Identified by similarity to SP:P24231; match to protein family HMM PF01523. | 0.822 |
pmbA | ECH_0653 | ECH_0650 | ECH_0653 | pmbA protein; Identified by similarity to SP:P24231; match to protein family HMM PF01523. | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | 0.534 |
pmbA | atpG | ECH_0650 | ECH_0652 | pmbA protein; Identified by similarity to SP:P24231; match to protein family HMM PF01523. | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.806 |
pmbA | folE | ECH_0650 | ECH_0651 | pmbA protein; Identified by similarity to SP:P24231; match to protein family HMM PF01523. | GTP cyclohydrolase I; Identified by similarity to SP:Q54769; match to protein family HMM PF01227. | 0.822 |
pmbA | tldD | ECH_0650 | ECH_0152 | pmbA protein; Identified by similarity to SP:P24231; match to protein family HMM PF01523. | tldD protein; Identified by similarity to SP:P46473; match to protein family HMM PF01523. | 0.927 |
tldD | pmbA | ECH_0152 | ECH_0650 | tldD protein; Identified by similarity to SP:P46473; match to protein family HMM PF01523. | pmbA protein; Identified by similarity to SP:P24231; match to protein family HMM PF01523. | 0.927 |