ECH_0797 protein (Ehrlichia chaffeensis) - STRING interaction network

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ECH_0797

Smr domain protein; Identified by match to protein family HMM PF01713. (189 aa)

Predicted Functional Partners:

rpoZ

0.732

rplV

0.566

rpsL

0.512

thiC

0.511

rpsG

0.510

rpsN

0.507

rpmB

0.507

rplW

0.505

rpsJ

0.504

rpsT

0.501

Your Current Organism:

Ehrlichia chaffeensis

NCBI taxonomy Id: 205920
Other names: E. chaffeensis str. Arkansas, Ehrlichia chaffeensis Arkansas, Ehrlichia chaffeensis str. Arkansas

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECH_0797	rplV	ECH_0797	ECH_0414	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.566
ECH_0797	rplW	ECH_0797	ECH_0411	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.505
ECH_0797	rpmB	ECH_0797	ECH_0484	Smr domain protein; Identified by match to protein family HMM PF01713.	50S ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.507
ECH_0797	rpoZ	ECH_0797	ECH_0796	Smr domain protein; Identified by match to protein family HMM PF01713.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.732
ECH_0797	rpsG	ECH_0797	ECH_0962	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.510
ECH_0797	rpsJ	ECH_0797	ECH_0408	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.504
ECH_0797	rpsL	ECH_0797	ECH_0963	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.512
ECH_0797	rpsN	ECH_0797	ECH_0422	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.507
ECH_0797	rpsT	ECH_0797	ECH_0071	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.501
ECH_0797	thiC	ECH_0797	ECH_0798	Smr domain protein; Identified by match to protein family HMM PF01713.	Thiamin biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.	0.511
rplV	ECH_0797	ECH_0414	ECH_0797	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	Smr domain protein; Identified by match to protein family HMM PF01713.	0.566
rplV	rplW	ECH_0414	ECH_0411	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplV	rpmB	ECH_0414	ECH_0484	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	50S ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplV	rpoZ	ECH_0414	ECH_0796	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.891
rplV	rpsG	ECH_0414	ECH_0962	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rplV	rpsJ	ECH_0414	ECH_0408	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rplV	rpsL	ECH_0414	ECH_0963	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rplV	rpsN	ECH_0414	ECH_0422	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	Ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.999
rplV	rpsT	ECH_0414	ECH_0071	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.996
rplW	ECH_0797	ECH_0411	ECH_0797	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	Smr domain protein; Identified by match to protein family HMM PF01713.	0.505