STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECH_1038Hypothetical protein; Identified by Glimmer2; putative. (1963 aa)    
Predicted Functional Partners:
ECH_0114
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.565
ECH_0526
Conserved domain protein; Identified by similarity to GB:AAS14436.1.
      
 0.565
ECH_0249
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.564
ECH_0258
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.564
ECH_0889
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.564
ECH_1030
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.564
ECH_1048
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.564
omp-1F
Major outer membrane protein OMP-1F; Identified by similarity to GB:AAC02940.1; match to protein family HMM PF01617.
      
 0.564
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.563
ECH_0462
Identified by match to protein family HMM PF00691.
      
 0.561
Your Current Organism:
Ehrlichia chaffeensis
NCBI taxonomy Id: 205920
Other names: E. chaffeensis str. Arkansas, Ehrlichia chaffeensis Arkansas, Ehrlichia chaffeensis str. Arkansas
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.